Entry Detail


General Information

Database ID:exR0450716
RNA Name:HLA-C
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):31268749End Site(bp):31272130
External Links:ENSG00000204525



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF1
chr6
30571393
30597179
+
AC005258.1
chr19
2269525
2341172
+
AC010323.1
chr19
8308283
8321379
-
AC015813.2
chr17
57989038
58007246
-
AC018523.2
chr11
14493783
14520344
-
AC024592.3
chr19
5866171
5903787
-
AC027644.4
chr7
66628958
66811189
+
AC087289.3
chr17
75898645
75930129
-
ACOT9
chrX
23701055
23766475
-
ACSS2
chr20
34872146
34927962
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTL6A
chr3
179562886
179588407
+
ACTR6
chr12
100199122
100241865
+
AD000671.1
chr19
35745678
35754519
+
ADA
chr20
44619522
44652233
-
ADD1
chr4
2843857
2930076
+
ADD3
chr10
109996368
110135565
+
ADORA2A
chr22
24417879
24442357
+
AFF1
chr4
86935002
87141054
+
AGPAT3
chr21
43865223
43987592
+
AHRR
chr5
271670
438291
+
AIMP1
chr4
106315544
106349456
+
AKR1A1
chr1
45550543
45570049
+
AKT1S1
chr19
49869033
49878459
-
AKT3
chr1
243488233
243851079
-
AL110118.2
chr14
93184973
93218586
+
AL133352.1
chr10
100505628
100529881
-
AL136295.5
chr14
24147548
24166452
+
AL928654.3
chr14
105487199
105492267
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6891-3p
chr6
31355228
31355248
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC093512.1
chr16
30064306
30064825
-
AC099329.1
chr3
42785087
42852428
-
AD000090.1
chr19
35557956
35581954
+
AF131216.4
chr8
11283481
11285068
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.