Entry Detail


General Information

Database ID:exR0450722
RNA Name:HLA-DPB1
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):33075990End Site(bp):33089696
External Links:ENSG00000223865



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF1
chr6
30571393
30597179
+
ABHD14B
chr3
51968510
51983409
-
AC004832.3
chr22
30409255
30428990
+
AC004922.1
chr7
99325879
99394653
+
AC007192.1
chr19
18153158
18178117
+
AC008878.3
chr19
7382834
7470241
+
AC011462.1
chr19
41350853
41425001
+
AC020909.1
chr19
50415799
50428409
+
AC120057.2
chr17
7240427
7244635
-
ACACA
chr17
37084992
37406836
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
AEN
chr15
88621337
88632281
+
AFMID
chr17
78187317
78207701
+
AHCYL1
chr1
109984765
110023742
+
AKR1A1
chr1
45550543
45570049
+
AL136454.1
chr1
192716132
192716653
+
AL669918.1
chr6
32813767
32838822
-
AL928654.3
chr14
105487199
105492267
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010327.5
chr19
55216660
55221616
+
AC016730.1
chr2
13723048
13758152
+
AC026471.1
chr16
31456711
31459736
-
AC051619.7
chr15
45200325
45200632
-
AC139149.1
chr17
81514047
81527776
+
AC245014.3
chr1
145281116
145281462
+
AL137782.1
chr13
75549773
75807120
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.