Entry Detail


General Information

Database ID:exR0450723
RNA Name:HLA-DQA1
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):32628179End Site(bp):32647062
External Links:ENSG00000196735



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF1
chr6
30571393
30597179
+
ABI2
chr2
203328239
203447728
+
AC006538.2
chr19
2717769
2740048
-
AC007192.1
chr19
18153158
18178117
+
AC007998.2
chr18
35443871
35497940
-
AC011448.1
chr19
19516227
19536076
+
AC011462.1
chr19
41350853
41425001
+
AC026464.4
chr16
69299682
69322700
+
AC068580.4
chr11
1734821
1763954
-
AC073082.1
chr2
48632291
48755724
-
ACAD11
chr3
132558138
132660082
-
ACAD8
chr11
134253495
134265855
+
ACTA2
chr10
88935074
88991339
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR3
chr2
113890063
113962596
+
ADPRHL2
chr1
36088892
36093932
+
AHCY
chr20
34280268
34311802
-
AHRR
chr5
271670
438291
+
AIFM1
chrX
130129362
130165887
-
AL021997.3
chr6
28267121
28281580
+
AL136454.1
chr1
192716132
192716653
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005083.1
chr7
20217577
20221700
+
AC005899.4
chr17
32328441
32329395
+
AC007996.1
chr18
26542971
26545791
-
AC010618.3
chr19
17488990
17511889
-
AC012236.1
chr15
31221999
31230838
-
AC019205.1
chr6
73263212
73301789
+
AC099329.1
chr3
42785087
42852428
-
AC107027.3
chr3
131455126
131458598
-
AD000090.1
chr19
35557956
35581954
+
AL031428.1
chr1
23020147
23088058
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.