Entry Detail


General Information

Database ID:exR0450731
RNA Name:HLA-F
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):29722775End Site(bp):29738528
External Links:ENSG00000204642



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAMP
chr2
218264123
218270257
-
ABCA3
chr16
2275881
2340746
-
ABL1
chr9
130713016
130887675
+
AC010323.1
chr19
8308283
8321379
-
AC026464.4
chr16
69299682
69322700
+
AC092073.1
chr19
34396315
34409364
+
AC245033.1
chr15
82536788
82573194
-
ACACA
chr17
37084992
37406836
-
ACTA1
chr1
229431245
229434098
-
ACTB
chr7
5527148
5563784
-
ADAL
chr15
43330657
43354555
+
AEBP2
chr12
19404045
19720801
+
AFTPH
chr2
64524305
64593005
+
AHCY
chr20
34280268
34311802
-
AKAP8L
chr19
15380050
15419141
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6891-3p
chr6
31355228
31355248
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL035458.2
chr20
34234840
34281173
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.