Entry Detail


General Information

Database ID:exR0450747
RNA Name:HMGB2
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):173331376End Site(bp):173334432
External Links:ENSG00000164104



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA3
chr16
2275881
2340746
-
ACAD10
chr12
111686056
111757107
+
ACKR3
chr2
236567787
236582354
+
ACTG1
chr17
81509971
81523847
-
ACTR3
chr2
113890063
113962596
+
ADAM23
chr2
206443532
206621127
+
ADPGK
chr15
72751369
72785846
-
ADTRP
chr6
11712054
11807046
-
AGBL5
chr2
27042364
27070622
+
AHR
chr7
16916359
17346152
+
AKAP10
chr17
19904302
19978343
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006064.5
chr12
6510275
6510522
+
AC012321.1
chr16
69703065
69704652
+
AC018647.2
chr7
35695214
35699413
+
AC024940.6
chr12
31280422
31280895
-
AC097478.1
chr4
89743792
89744305
+
AC097534.1
chr4
173322206
173329694
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.