Entry Detail


General Information

Database ID:exR0450770
RNA Name:HNRNPA1P48
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):51553436End Site(bp):51647132
External Links:ENSG00000224578



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABAT
chr16
8674596
8784575
+
ABCG2
chr4
88090150
88231628
-
ABHD2
chr15
89087459
89202355
+
ABL1
chr9
130713016
130887675
+
AC010323.1
chr19
8308283
8321379
-
AC023055.1
chr12
55757275
55827546
-
AC026464.3
chr16
69335091
69356306
-
AC091551.1
chr18
50968019
51058144
+
AC092143.1
chr16
89919165
89936092
+
AC124312.1
chr15
24955034
25000276
+
AC138894.1
chr16
28456371
28492098
-
ACD
chr16
67657512
67660815
-
ACIN1
chr14
23058564
23095614
-
ACLY
chr17
41866917
41930542
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTN4
chr19
38647649
38731589
+
ACTR10
chr14
58200080
58235636
+
ADA
chr20
44619522
44652233
-
ADSL
chr22
40346500
40390463
+
AGRN
chr1
1020120
1056118
+
AHCY
chr20
34280268
34311802
-
AK1
chr9
127866486
127877675
-
AK2
chr1
33007940
33080996
-
AK9
chr6
109492856
109691217
-
AKAP17A
chrX
1591604
1602520
+
AL022238.4
chr22
40346529
40410054
+
AL136454.1
chr1
192716132
192716653
+
ALDH7A1
chr5
126531200
126595362
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004069.1
chr4
105137280
105140619
-
AC007952.4
chr17
19112000
19112636
-
AC016876.2
chr17
7581964
7584086
-
AC022098.1
chr19
14137146
14171267
+
AC025287.1
chr16
75541399
75608445
-
AC040162.3
chr16
67882461
67886367
+
AC132217.1
chr11
2129121
2129964
-
AC136475.1
chr11
318640
325631
+
AC139149.1
chr17
81514047
81527776
+
AC144548.1
chr12
110387463
110445548
-
AL021707.1
chr22
38739003
38749041
+
AL022311.1
chr22
37876148
37895563
+
AL121832.2
chr20
62386303
62386970
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.