Entry Detail


General Information

Database ID:exR0450903
RNA Name:HSPA4
RNA Type:mRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):133052013End Site(bp):133106449
External Links:ENSG00000170606



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCD4
chr14
74285269
74303055
-
ABHD13
chr13
108218392
108234243
+
ABRACL
chr6
139028745
139043302
+
AC002985.1
chr19
18907013
18934397
-
AC092073.1
chr19
34396315
34409364
+
AC124312.1
chr15
24955034
25000276
+
ADPRM
chr17
10697594
10711558
+
AEN
chr15
88621337
88632281
+
AFAP1L1
chr5
149271859
149343637
+
AGBL5
chr2
27042364
27070622
+
AGPS
chr2
177392757
177559299
+
AHCYL1
chr1
109984765
110023742
+
AIMP2
chr7
6009255
6023834
+
AK3
chr9
4709556
4742043
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-21-5p
chr17
59841273
59841294
+
hsa-miR-302d-3p
chr4
112648006
112648028
-
hsa-miR-367-3p
chr4
112647877
112647898
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC020663.1
chr16
4730115
4752565
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.