Entry Detail


General Information

Database ID:exR0451315
RNA Name:ITGA5
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):54395261End Site(bp):54419266
External Links:ENSG00000161638



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-22-3p
chr17
1713914
1713935
-
hsa-miR-149-5p
chr2
240456015
240456037
+
hsa-miR-326
chr11
75335108
75335127
-
hsa-miR-331-3p
chr12
95308480
95308500
+
hsa-miR-525-5p
chr19
53697547
53697567
+
hsa-miR-625-5p
chr14
65471116
65471136
+
hsa-miR-654-5p
chr14
101040234
101040255
+
hsa-miR-330-5p
chr19
45639049
45639070
-
hsa-miR-760
chr1
93846880
93846899
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC245014.3
chr1
145281116
145281462
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.