Entry Detail


General Information

Database ID:exR0451345
RNA Name:ITM2C
RNA Type:mRNA
Chromosome:chr2
Starnd:+
Coordinate:
Start Site(bp):230864639End Site(bp):230879248
External Links:ENSG00000135916



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD8
chr19
17292131
17310236
-
AC010422.3
chr19
12643831
12648397
-
AC013394.1
chr15
92883413
92949230
+
AC092143.1
chr16
89919165
89936092
+
AC124312.1
chr15
24955034
25000276
+
AC135050.2
chr16
31083439
31094956
-
ACP1
chr2
264140
278283
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ADAM17
chr2
9488486
9556732
-
ADNP2
chr18
80109262
80147523
+
ADSL
chr22
40346500
40390463
+
AEN
chr15
88621337
88632281
+
AGPAT2
chr9
136673143
136687457
-
AICDA
chr12
8602170
8612867
-
AK2
chr1
33007940
33080996
-
AKAP13
chr15
85380571
85749358
+
AL022238.4
chr22
40346529
40410054
+
AL713999.1
chr1
155169409
155187272
-
ALDH16A1
chr19
49453225
49471050
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-4442
chr3
25664875
25664891
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC020663.1
chr16
4730115
4752565
-
AC106864.1
chr4
112693047
112706810
-
AL022311.1
chr22
37876148
37895563
+
AL031282.2
chr1
1702736
1737688
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.