Entry Detail


General Information

Database ID:exR0451589
RNA Name:KHSRP
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):6413348End Site(bp):6424794
External Links:ENSG00000088247



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AACS
chr12
125065434
125143333
+
AC010422.3
chr19
12643831
12648397
-
AC090360.1
chr18
80034346
80097088
+
ACOT7
chr1
6264269
6394391
-
ACTB
chr7
5527148
5563784
-
ADRM1
chr20
62302093
62308862
+
AFDN
chr6
167826922
167972023
+
AGPS
chr2
177392757
177559299
+
AGRN
chr1
1020120
1056118
+
AHCY
chr20
34280268
34311802
-
AJAP1
chr1
4654609
4792534
+
AK4
chr1
65147549
65232145
+
AKR7A2
chr1
19303965
19312146
-
AL121594.1
chr14
35122549
35317474
+
ALDH9A1
chr1
165662216
165698863
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-96-5p
chr7
129774739
129774761
-
hsa-miR-182-5p
chr7
129770447
129770470
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC016876.2
chr17
7581964
7584086
-
AC105036.3
chr15
75527150
75601205
-
AC132217.1
chr11
2129121
2129964
-
AD000090.1
chr19
35557956
35581954
+
AL020995.1
chr1
32987075
33032469
+
AL121827.2
chr20
63253978
63261615
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.