Entry Detail


General Information

Database ID:exR0451917
RNA Name:LCP1
RNA Type:mRNA
Chromosome:chr13
Starnd:-
Coordinate:
Start Site(bp):46125920End Site(bp):46211871
External Links:ENSG00000136167



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCD4
chr14
74285269
74303055
-
AC004922.1
chr7
99325879
99394653
+
AC008982.1
chr19
38817471
38840178
-
AC012254.2
chr18
47108188
47176345
-
AC023055.1
chr12
55757275
55827546
-
ACAP2
chr3
195274745
195443044
-
ACBD5
chr10
27195214
27242130
-
ACP1
chr2
264140
278283
+
ACSS1
chr20
25006230
25058980
-
ACTB
chr7
5527148
5563784
-
ACTBL2
chr5
57480018
57482811
-
ACTG1
chr17
81509971
81523847
-
ACTR3C
chr7
150243916
150323725
-
ADAR
chr1
154582057
154628013
-
ADSL
chr22
40346500
40390463
+
AFG3L2
chr18
12328944
12377227
-
AFTPH
chr2
64524305
64593005
+
AGPAT4
chr6
161129967
161274061
-
AHSA1
chr14
77457870
77469472
+
AKR1A1
chr1
45550543
45570049
+
AL021546.1
chr12
120438198
120460006
+
AL022238.4
chr22
40346529
40410054
+
AL109827.1
chr20
35632340
35674544
-
AL139300.1
chr14
103562962
103685924
+
ALAS1
chr3
52198086
52214327
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006064.5
chr12
6510275
6510522
+
AC026202.2
chr3
5156905
5187329
-
AC026202.3
chr3
5187172
5188298
-
AC055860.1
chr11
18000542
18022931
-
AC079781.5
chr7
97851688
97972985
-
AC135048.1
chr16
30948386
30956511
+
AC245014.3
chr1
145281116
145281462
+
AL022311.1
chr22
37876148
37895563
+
AL137058.2
chr13
52600042
52642542
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.