Entry Detail


General Information

Database ID:exR0452014
RNA Name:LIN28A
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):26410817End Site(bp):26429728
External Links:ENSG00000131914



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AHCYL2
chr7
129225023
129430211
+
AGAP1
chr2
235494043
236131800
+
ACKR3
chr2
236567787
236582354
+
AC131160.1
chr3
183815568
183884889
-
ACTR3B
chr7
152759749
152855378
+
AC006064.6
chr12
6556886
6607367
-
AC027644.4
chr7
66628958
66811189
+
AC008575.1
chr5
112827213
112867582
+
AASS
chr7
122073549
122144255
-
AC073508.2
chr17
40627356
40665141
-
ACOT2
chr14
73567620
73575658
+
ADAR
chr1
154582057
154628013
-
AC004832.3
chr22
30409255
30428990
+
ABCE1
chr4
145098288
145129524
+
AKAP8L
chr19
15380050
15419141
-
AKR7A2
chr1
19303965
19312146
-
ADCY2
chr5
7396138
7830081
+
AL139300.1
chr14
103562962
103685924
+
ALDH4A1
chr1
18871430
18902724
-
AK7
chr14
96392128
96489427
+
ABI2
chr2
203328239
203447728
+
AC007192.1
chr19
18153158
18178117
+
AL138752.2
chr9
37588413
38068687
-
AC118549.1
chr1
77562416
77683419
-
ACAA1
chr3
38103129
38137242
-
ADGRL1
chr19
14147743
14206187
-
ADD3
chr10
109996368
110135565
+
AK2
chr1
33007940
33080996
-
ABHD13
chr13
108218392
108234243
+
ACTB
chr7
5527148
5563784
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-3654
chr7
133034860
133034878
-
hsa-miR-664b-5p
chrX
154768596
154768619
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009446.1
chr8
71675300
71702786
+
AC012615.1
chr19
1874871
1876169
-
AC016747.4
chr2
61115787
61164825
+
AC016876.2
chr17
7581964
7584086
-
AC106864.1
chr4
112693047
112706810
-
AC114284.1
chr5
120781218
120790778
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL137782.1
chr13
75549773
75807120
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.