Entry Detail


General Information

Database ID:exR0452040
RNA Name:LITAF
RNA Type:mRNA
Chromosome:chr16
Starnd:-
Coordinate:
Start Site(bp):11547722End Site(bp):11636381
External Links:ENSG00000189067



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABI1
chr10
26746593
26861087
-
ABRACL
chr6
139028745
139043302
+
AC004832.3
chr22
30409255
30428990
+
AC004922.1
chr7
99325879
99394653
+
AC011511.1
chr19
10305427
10316009
-
AC131160.1
chr3
183815568
183884889
-
ACADM
chr1
75724347
75787575
+
AHCY
chr20
34280268
34311802
-
AL139011.2
chr1
160216800
160285130
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-15a-5p
chr13
50049167
50049188
-
hsa-miR-15b-5p
chr3
160404607
160404628
+
hsa-miR-424-5p
chrX
134546680
134546701
-
hsa-miR-497-5p
chr17
7017979
7017999
-
hsa-miR-193a-5p
chr17
31560016
31560037
+
hsa-miR-665
chr14
100875075
100875094
+
hsa-miR-1270
chr19
20399320
20399342
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC026362.1
chr12
122975320
122982907
+
AC068473.5
chr18
79677287
79679358
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.