Entry Detail


General Information

Database ID:exR0452231
RNA Name:LSM4
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):18306230End Site(bp):18323274
External Links:ENSG00000130520



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABR
chr17
1003518
1229738
-
AC011462.1
chr19
41350853
41425001
+
AC026464.4
chr16
69299682
69322700
+
AC073508.2
chr17
40627356
40665141
-
AC087289.3
chr17
75898645
75930129
-
ACADVL
chr17
7217125
7225266
+
ACTG1
chr17
81509971
81523847
-
ACVR2B
chr3
38453890
38493142
+
ADAR
chr1
154582057
154628013
-
ADARB1
chr21
45073853
45226560
+
AGAP1
chr2
235494043
236131800
+
AGFG1
chr2
227472152
227561214
+
AGK
chr7
141551278
141655244
+
AHNAK
chr11
62433542
62556235
-
AL132671.2
chr6
117318211
117573571
-
AL139353.1
chr14
31334312
31457441
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC022167.2
chr16
8848105
8860456
+
AC124068.2
chr15
89335053
89336161
+
AC139887.2
chr4
760202
781859
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.