Entry Detail


General Information

Database ID:exR0452924
RNA Name:MRFAP1
RNA Type:mRNA
Chromosome:chr4
Starnd:+
Coordinate:
Start Site(bp):6640091End Site(bp):6642745
External Links:ENSG00000179010



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AASS
chr7
122073549
122144255
-
ABCC1
chr16
15949577
16143074
+
ABCD4
chr14
74285269
74303055
-
AC009133.6
chr16
29812261
29820092
+
AC023055.1
chr12
55757275
55827546
-
AC118553.2
chr1
99970011
100083321
+
AC245033.1
chr15
82536788
82573194
-
ACSL3
chr2
222860942
222944639
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ADGRL2
chr1
81306160
81992436
+
AFDN
chr6
167826922
167972023
+
AK8
chr9
132725578
132878777
-
AKIRIN1
chr1
38991276
39006059
+
ALDH18A1
chr10
95605941
95656711
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
hsa-miR-330-3p
chr19
45639009
45639031
-
hsa-miR-708-5p
chr11
79402077
79402099
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004540.1
chr7
26398593
26497595
+
AC010542.4
chr16
66549280
66551189
+
AC079781.5
chr7
97851688
97972985
-
AC093827.4
chr4
86924630
86936202
-
AC097478.1
chr4
89743792
89744305
+
AC106864.1
chr4
112693047
112706810
-
AC126365.1
chr17
20788071
20789584
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.