Entry Detail


General Information

Database ID:exR0453052
RNA Name:MSN
RNA Type:mRNA
Chromosome:chrX
Starnd:+
Coordinate:
Start Site(bp):65588377End Site(bp):65741931
External Links:ENSG00000147065



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD14A-ACY1
chr3
51974706
51989183
+
ABI3
chr17
49210411
49223225
+
AC012184.2
chr16
70299194
70372582
+
AC048338.1
chr12
122207779
122266423
-
AC138811.2
chr16
18788063
18801519
-
ACIN1
chr14
23058564
23095614
-
ACTG1
chr17
81509971
81523847
-
ACY1
chr3
51983340
51989197
+
AFDN
chr6
167826922
167972023
+
AHCY
chr20
34280268
34311802
-
AIF1L
chr9
131096476
131123152
+
AL049844.3
chr6
143857318
143938471
+
AL358075.4
chr1
46043661
46176488
-
AL669918.1
chr6
32813767
32838822
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6758-3p
chr12
57512731
57512750
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC012321.1
chr16
69703065
69704652
+
AC018521.1
chr17
47945424
47981736
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.