Entry Detail


General Information

Database ID:exR0453067
RNA Name:MT-CO3
RNA Type:mRNA
Chromosome:chrMT
Starnd:+
Coordinate:
Start Site(bp):9207End Site(bp):9990
External Links:ENSG00000198938



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACVR1
chr2
157736444
157876330
-
ABCF1
chr6
30571393
30597179
+
AGO4
chr1
35808016
35857890
+
AHNAK
chr11
62433542
62556235
-
ACVR2B
chr3
38453890
38493142
+
AL358113.1
chr9
69035747
69255187
+
ALDH5A1
chr6
24494867
24537207
+
ACTL6A
chr3
179562886
179588407
+
AATF
chr17
36948954
37056871
+
AIF1L
chr9
131096476
131123152
+
AC004832.3
chr22
30409255
30428990
+
AFDN
chr6
167826922
167972023
+
AC008878.3
chr19
7382834
7470241
+
ADNP
chr20
50888916
50931437
-
ABLIM1
chr10
114431113
114768061
-
ABI2
chr2
203328239
203447728
+
AHSA1
chr14
77457870
77469472
+
ACLY
chr17
41866917
41930542
-
AKAP1
chr17
57085092
57121346
+
AL121845.2
chr20
63738270
63740398
+
AL049697.1
chr6
87408012
87511634
+
AC013394.1
chr15
92883413
92949230
+
AC138811.2
chr16
18788063
18801519
-
AL589666.1
chr6
85557978
85615234
-
AIFM2
chr10
70098223
70132934
-
ADRM1
chr20
62302093
62308862
+
ACTG1
chr17
81509971
81523847
-
ACO2
chr22
41469117
41528989
+
AC023055.1
chr12
55757275
55827546
-
ACAP2
chr3
195274745
195443044
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1244
chr2
231713368
231713393
+
hsa-miR-3654
chr7
133034860
133034878
-
hsa-miR-4426
chr1
192716333
192716349
+
hsa-miR-5100
chr10
42997630
42997651
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007780.1
chr17
68413623
68524949
+
AC016876.2
chr17
7581964
7584086
-
AC020663.1
chr16
4730115
4752565
-
AC092910.3
chr3
120094895
120136783
+
AC244090.1
chrX
154424380
154428479
-
ACVR2B-AS1
chr3
38451027
38454820
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.