Entry Detail


General Information

Database ID:exR0453069
RNA Name:MT-ND1
RNA Type:mRNA
Chromosome:chrMT
Starnd:+
Coordinate:
Start Site(bp):3307End Site(bp):4262
External Links:ENSG00000198888



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD12
chr20
25294742
25390835
-
ABLIM1
chr10
114431113
114768061
-
AC008575.1
chr5
112827213
112867582
+
AC048338.1
chr12
122207779
122266423
-
AC068946.2
chr2
219209772
219222738
-
AC092718.3
chr16
81053587
81096296
-
AC092718.8
chr16
81022316
81096284
-
ACAD10
chr12
111686056
111757107
+
ACTL6A
chr3
179562886
179588407
+
ACTR1A
chr10
102461881
102502712
-
ADAM11
chr17
44758988
44781846
+
ADGRV1
chr5
90529344
91164437
+
ADORA2A
chr22
24417879
24442357
+
AGPAT1
chr6
32168212
32178096
-
AHCY
chr20
34280268
34311802
-
AL133352.1
chr10
100505628
100529881
-
AL355987.3
chr9
136791379
136800595
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC002550.2
chr16
19694035
19694428
-
AC007952.4
chr17
19112000
19112636
-
AC008969.1
chr19
58002061
58011232
+
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AC027307.2
chr19
1457670
1458580
-
AC090152.1
chr8
59119040
59123478
+
AC245014.3
chr1
145281116
145281462
+
AD000090.1
chr19
35557956
35581954
+
AL035425.4
chrX
108719949
108724944
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.