Entry Detail


General Information

Database ID:exR0453070
RNA Name:MT-ND2
RNA Type:mRNA
Chromosome:chrMT
Starnd:+
Coordinate:
Start Site(bp):4470End Site(bp):5511
External Links:ENSG00000198763



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAMP
chr2
218264123
218270257
-
AARS2
chr6
44298731
44313347
-
AATF
chr17
36948954
37056871
+
AC002996.1
chr12
111753890
111791418
+
AC005943.1
chr19
1578339
1605445
-
AC008695.1
chr5
131425891
131796983
-
AC008878.3
chr19
7382834
7470241
+
AC026464.4
chr16
69299682
69322700
+
AC099811.2
chr17
42119674
42154916
-
ACAD9
chr3
128879596
128916067
+
ACTG1
chr17
81509971
81523847
-
ACTR2
chr2
65227753
65271253
+
ADAMTS3
chr4
72280969
72569221
-
ADD1
chr4
2843857
2930076
+
ADNP2
chr18
80109262
80147523
+
AFAP1
chr4
7758714
7939926
-
AHCY
chr20
34280268
34311802
-
AHI1
chr6
135283532
135497765
-
AIF1L
chr9
131096476
131123152
+
AKR1A1
chr1
45550543
45570049
+
AL138752.2
chr9
37588413
38068687
-
ALDH18A1
chr10
95605941
95656711
-
ALDH2
chr12
111766887
111817532
+
ALDH7A1
chr5
126531200
126595362
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004812.2
chr12
120116907
120119000
+
AC005726.2
chr17
28633206
28635950
+
AC007952.4
chr17
19112000
19112636
-
AC009446.1
chr8
71675300
71702786
+
AC009902.2
chr8
81279871
81281446
-
AC021078.1
chr5
149494314
149504670
-
AC097478.1
chr4
89743792
89744305
+
AC124045.1
chr3
44667412
44669364
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.