Entry Detail


General Information

Database ID:exR0453072
RNA Name:MT-ND4
RNA Type:mRNA
Chromosome:chrMT
Starnd:+
Coordinate:
Start Site(bp):10760End Site(bp):12137
External Links:ENSG00000198886



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH18A1
chr10
95605941
95656711
-
ADNP
chr20
50888916
50931437
-
ADGRL1
chr19
14147743
14206187
-
AC040162.1
chr16
67929614
67936017
-
AKAP1
chr17
57085092
57121346
+
ACADVL
chr17
7217125
7225266
+
AL365205.1
chr6
41780349
41790141
+
AC073896.1
chr12
56285916
56316059
-
AC008403.1
chr19
48465837
48472431
+
ACTG1
chr17
81509971
81523847
-
AC011448.1
chr19
19516227
19536076
+
AHCY
chr20
34280268
34311802
-
ADIPOR2
chr12
1688574
1788674
+
AC091167.2
chr15
90249556
90272208
+
AKAP12
chr6
151239967
151358559
+
ADH5
chr4
99070978
99088801
-
AHCYL1
chr1
109984765
110023742
+
ACTR2
chr2
65227753
65271253
+
AC139530.2
chr17
81703371
81720539
+
AKAP10
chr17
19904302
19978343
-
ACTB
chr7
5527148
5563784
-
ACTR1A
chr10
102461881
102502712
-
AAMP
chr2
218264123
218270257
-
ADCY1
chr7
45574140
45723116
+
ALDH1B1
chr9
38392702
38398661
+
AL139300.1
chr14
103562962
103685924
+
ACTL6A
chr3
179562886
179588407
+
ABRACL
chr6
139028745
139043302
+
AEN
chr15
88621337
88632281
+
ABHD13
chr13
108218392
108234243
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6728-3p
chr1
8866502
8866522
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
A1BG-AS1
chr19
58347718
58355455
+
AC002470.2
chr22
20979462
20998121
+
AC006504.5
chr19
27793431
27984984
+
AC007952.4
chr17
19112000
19112636
-
AC008124.1
chr12
45718046
45727775
-
AC016876.2
chr17
7581964
7584086
-
AC099329.1
chr3
42785087
42852428
-
AC108010.1
chr7
128574751
128626473
+
AC245014.3
chr1
145281116
145281462
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.