Entry Detail


General Information

Database ID:exR0453520
RNA Name:NEK6
RNA Type:mRNA
Chromosome:chr9
Starnd:+
Coordinate:
Start Site(bp):124257606End Site(bp):124353307
External Links:ENSG00000119408



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCE1
chr4
145098288
145129524
+
ABRACL
chr6
139028745
139043302
+
AC010422.3
chr19
12643831
12648397
-
AC093525.1
chr16
2513965
2527955
+
ACTG1
chr17
81509971
81523847
-
ACTN1
chr14
68874143
68979440
-
ADAM15
chr1
155050566
155062775
+
AGPAT1
chr6
32168212
32178096
-
AIM2
chr1
159062484
159147096
-
AK9
chr6
109492856
109691217
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
AC135048.1
chr16
30948386
30956511
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.