Entry Detail


General Information

Database ID:exR0455724
RNA Name:RAB1B
RNA Type:mRNA
Chromosome:chr11
Starnd:+
Coordinate:
Start Site(bp):66268590End Site(bp):66277492
External Links:ENSG00000174903



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD16A
chr6
31686955
31703356
-
ABTB2
chr11
34150987
34358010
-
AC010422.3
chr19
12643831
12648397
-
AC020909.1
chr19
50415799
50428409
+
ACAT2
chr6
159762045
159779112
+
ACTN4
chr19
38647649
38731589
+
ACTR5
chr20
38748460
38772520
+
ADAM19
chr5
157395534
157575775
-
AICDA
chr12
8602170
8612867
-
AK2
chr1
33007940
33080996
-
AKR1A1
chr1
45550543
45570049
+
AL121594.1
chr14
35122549
35317474
+
AL136295.5
chr14
24147548
24166452
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-122-5p
chr18
58451088
58451109
+
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-650
chr22
22822791
22822811
+
hsa-miR-654-5p
chr14
101040234
101040255
+
hsa-miR-1321
chrX
85835832
85835849
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
AC079807.1
chr2
47905678
47907810
+
AC106886.2
chr16
30740667
30751381
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.