Entry Detail


General Information

Database ID:exR0455837
RNA Name:RAN
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):130872037End Site(bp):130877678
External Links:ENSG00000132341



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABT1
chr6
26596953
26600739
+
AC004997.1
chr22
30285238
30299482
-
AC006030.1
chr2
74211604
74363377
-
AC010132.3
chr7
42909273
42932174
-
AC092073.1
chr19
34396315
34409364
+
AC124312.1
chr15
24955034
25000276
+
AC135050.2
chr16
31083439
31094956
-
ACAA2
chr18
49782164
49813953
-
ACADVL
chr17
7217125
7225266
+
ACIN1
chr14
23058564
23095614
-
ACO1
chr9
32384603
32454769
+
ACO2
chr22
41469117
41528989
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR5
chr20
38748460
38772520
+
ADAT3
chr19
1905399
1913447
+
ADCY3
chr2
24819169
24919839
-
ADGRG1
chr16
57610652
57665580
+
ADH5
chr4
99070978
99088801
-
ADSL
chr22
40346500
40390463
+
AEN
chr15
88621337
88632281
+
AFDN
chr6
167826922
167972023
+
AGO3
chr1
35930718
36072500
+
AGPAT3
chr21
43865223
43987592
+
AIF1L
chr9
131096476
131123152
+
AKAP1
chr17
57085092
57121346
+
AKIRIN1
chr1
38991276
39006059
+
AL021546.1
chr12
120438198
120460006
+
AL022238.4
chr22
40346529
40410054
+
AL136295.4
chr14
24180395
24190416
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-302b-3p
chr4
112648489
112648511
-
hsa-miR-302a-5p
chr4
112648224
112648246
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC012236.1
chr15
31221999
31230838
-
AC079781.5
chr7
97851688
97972985
-
AC106864.1
chr4
112693047
112706810
-
AC113189.4
chr17
7439506
7445966
+
AC245014.3
chr1
145281116
145281462
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.