Entry Detail


General Information

Database ID:exR0455919
RNA Name:RBFOX2
RNA Type:mRNA
Chromosome:chr22
Starnd:-
Coordinate:
Start Site(bp):35738736End Site(bp):36028824
External Links:ENSG00000100320



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAGAB
chr15
67200667
67255195
-
AASDH
chr4
56338287
56387508
-
ABCF1
chr6
30571393
30597179
+
ACP1
chr2
264140
278283
+
ACSF3
chr16
89088375
89164121
+
ADGRL3
chr4
61201258
62078335
+
AIMP2
chr7
6009255
6023834
+
ALAS1
chr3
52198086
52214327
+
ALDH1A3
chr15
100877714
100916626
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-25-3p
chr7
100093571
100093592
-
hsa-miR-92a-3p
chrX
134169544
134169565
-
hsa-miR-183-5p
chr7
129774967
129774988
-
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-367-3p
chr4
112647877
112647898
-
hsa-miR-325
chrX
77005464
77005486
-
hsa-miR-491-5p
chr9
20716120
20716141
+
hsa-miR-92b-3p
chr1
155195237
155195258
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005618.1
chr5
141326210
141329357
+
AC007952.4
chr17
19112000
19112636
-
AC020928.1
chr19
36773112
36777078
+
AC040934.1
chr17
47409322
47423526
-
AC084125.2
chr8
144495458
144505444
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.