Entry Detail


General Information

Database ID:exR0456016
RNA Name:REEP4
RNA Type:mRNA
Chromosome:chr8
Starnd:-
Coordinate:
Start Site(bp):22138020End Site(bp):22141951
External Links:ENSG00000168476



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC093525.2
chr16
2496032
2520218
+
ACTG1
chr17
81509971
81523847
-
AKAP10
chr17
19904302
19978343
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-192-5p
chr11
64891203
64891223
-
hsa-miR-197-3p
chr1
109598940
109598961
+
hsa-miR-455-5p
chr9
114209449
114209470
+
hsa-miR-362-3p
chrX
50009005
50009026
+
hsa-miR-1321
chrX
85835832
85835849
+
hsa-miR-1197
chr14
101025620
101025640
+
hsa-miR-4707-3p
chr14
22956957
22956978
-
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.