Entry Detail


General Information

Database ID:exR0456412
RNA Name:RPS10-NUDT3
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):34284887End Site(bp):34426071
External Links:ENSG00000270800



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABRACL
chr6
139028745
139043302
+
AC008763.3
chr19
7678501
7682854
+
AC011511.4
chr19
10315471
10320678
-
ACER3
chr11
76860867
77026797
+
ACTR1A
chr10
102461881
102502712
-
ADD1
chr4
2843857
2930076
+
ADIPOR1
chr1
202940826
202958572
-
AHCYL1
chr1
109984765
110023742
+
AHSA1
chr14
77457870
77469472
+
AKT1
chr14
104769349
104795751
-
AL133352.1
chr10
100505628
100529881
-
AL162417.1
chr9
133098121
133163914
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-124-3p
chr8
64379210
64379231
+
hsa-miR-541-3p
chr14
101064548
101064569
+
hsa-miR-873-5p
chr9
28888925
28888945
-
hsa-miR-1321
chrX
85835832
85835849
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC008915.2
chr16
23446446
23447282
-
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.