Entry Detail


General Information

Database ID:exR0456415
RNA Name:RPS13
RNA Type:mRNA
Chromosome:chr11
Starnd:-
Coordinate:
Start Site(bp):17074388End Site(bp):17077715
External Links:ENSG00000110700



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007192.1
chr19
18153158
18178117
+
AC008764.1
chr19
16479067
16628204
-
AC010323.1
chr19
8308283
8321379
-
AC015813.2
chr17
57989038
58007246
-
ACAD9
chr3
128879596
128916067
+
ACAT2
chr6
159762045
159779112
+
ACTG1
chr17
81509971
81523847
-
ACTR2
chr2
65227753
65271253
+
ADD1
chr4
2843857
2930076
+
ADGRL1
chr19
14147743
14206187
-
ADK
chr10
74151202
74709963
+
ADSL
chr22
40346500
40390463
+
AGO2
chr8
140520156
140635633
-
AHCYL1
chr1
109984765
110023742
+
AHNAK
chr11
62433542
62556235
-
AHSA1
chr14
77457870
77469472
+
AKAP8
chr19
15353385
15379798
-
AKAP9
chr7
91940867
92110673
+
AKT1
chr14
104769349
104795751
-
AL022238.4
chr22
40346529
40410054
+
AL049629.2
chr11
33698261
33722467
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-3651
chr9
92292461
92292484
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC073389.1
chr10
73625996
73626790
+
AC113189.4
chr17
7439506
7445966
+
AL033543.1
chr22
44102779
44116232
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.