Entry Detail


General Information

Database ID:exR0456419
RNA Name:RPS16
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):39433137End Site(bp):39435949
External Links:ENSG00000105193



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL928654.3
chr14
105487199
105492267
+
ACTA2
chr10
88935074
88991339
-
ACOT9
chrX
23701055
23766475
-
AC009690.1
chr15
72284727
72375981
-
ACTN4
chr19
38647649
38731589
+
ALDOA
chr16
30064164
30070457
+
ADORA2A
chr22
24417879
24442357
+
ACTL6A
chr3
179562886
179588407
+
AKAP5
chr14
64465499
64474503
+
ADGRG6
chr6
142301854
142446266
+
AC010422.3
chr19
12643831
12648397
-
AICDA
chr12
8602170
8612867
-
AHSA1
chr14
77457870
77469472
+
AL121845.2
chr20
63738270
63740398
+
ACIN1
chr14
23058564
23095614
-
AL121845.3
chr20
63708864
63739103
+
ABCB8
chr7
151028422
151047782
+
ADM
chr11
10305073
10307397
+
ADIPOR2
chr12
1688574
1788674
+
ACO2
chr22
41469117
41528989
+
AEN
chr15
88621337
88632281
+
ACAA2
chr18
49782164
49813953
-
AC010323.1
chr19
8308283
8321379
-
AHCY
chr20
34280268
34311802
-
ADI1
chr2
3497366
3519531
-
AC004922.1
chr7
99325879
99394653
+
ADD1
chr4
2843857
2930076
+
ABCF1
chr6
30571393
30597179
+
AC124312.1
chr15
24955034
25000276
+
AK2
chr1
33007940
33080996
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-492
chr12
94834427
94834449
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
AC027020.2
chr15
100547765
100550153
-
AC067852.1
chr17
42536510
42562062
+
AC096536.3
chr1
54874672
54883664
+
AC104596.1
chr4
142933195
143184861
-
AC245014.3
chr1
145281116
145281462
+
AD000090.1
chr19
35557956
35581954
+
AL132780.1
chr14
22929607
22956374
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.