Entry Detail


General Information

Database ID:exR0456424
RNA Name:RPS2
RNA Type:mRNA
Chromosome:chr16
Starnd:-
Coordinate:
Start Site(bp):1962058End Site(bp):1964841
External Links:ENSG00000140988



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC087289.3
chr17
75898645
75930129
-
ADSL
chr22
40346500
40390463
+
ACTR3
chr2
113890063
113962596
+
ADPRH
chr3
119579268
119589945
+
ADAR
chr1
154582057
154628013
-
AC138811.2
chr16
18788063
18801519
-
ALDOA
chr16
30064164
30070457
+
AHCY
chr20
34280268
34311802
-
AL133352.1
chr10
100505628
100529881
-
AC093525.2
chr16
2496032
2520218
+
AC007192.1
chr19
18153158
18178117
+
AL590764.2
chrX
71103987
71111575
-
AC004832.3
chr22
30409255
30428990
+
AL669918.1
chr6
32813767
32838822
-
AC024592.3
chr19
5866171
5903787
-
AC010422.3
chr19
12643831
12648397
-
AL136295.1
chr14
24189157
24213473
-
ADGRG5
chr16
57542643
57591681
+
ADGRB1
chr8
142449430
142545009
+
AL021546.1
chr12
120438198
120460006
+
AC093525.1
chr16
2513965
2527955
+
AL022238.4
chr22
40346529
40410054
+
AGAP4
chr10
45825594
45853875
-
AC092143.1
chr16
89919165
89936092
+
AC015813.2
chr17
57989038
58007246
-
AC107871.1
chr15
68184032
68229718
-
AGAP3
chr7
151085831
151144436
+
AL603832.3
chr1
112702614
112711433
-
ACTG1
chr17
81509971
81523847
-
AC069503.2
chr12
121888809
121921470
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1244
chr2
231713368
231713393
+
hsa-miR-7111-3p
chr6
35470558
35470579
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC010542.4
chr16
66549280
66551189
+
AC087190.3
chr16
9104848
9113181
+
AC087521.3
chr11
43921059
44001157
+
AC108134.2
chr16
3156736
3157483
-
AC245033.4
chr15
82533175
82540008
-
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.