Entry Detail


General Information

Database ID:exR0456434
RNA Name:RPS28
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):8321158End Site(bp):8323340
External Links:ENSG00000233927



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABAT
chr16
8674596
8784575
+
ABHD12
chr20
25294742
25390835
-
ABHD8
chr19
17292131
17310236
-
AC005258.1
chr19
2269525
2341172
+
AC008763.2
chr19
7629796
7643048
+
ACAT2
chr6
159762045
159779112
+
ACTG1
chr17
81509971
81523847
-
ADAT3
chr19
1905399
1913447
+
ADIPOR2
chr12
1688574
1788674
+
AEBP2
chr12
19404045
19720801
+
AIFM1
chrX
130129362
130165887
-
AL136454.1
chr1
192716132
192716653
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-4426
chr1
192716333
192716349
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004069.1
chr4
105137280
105140619
-
AC009446.1
chr8
71675300
71702786
+
AC105105.1
chr18
58535415
58538552
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.