Entry Detail


General Information

Database ID:exR0456435
RNA Name:RPS29
RNA Type:mRNA
Chromosome:chr14
Starnd:-
Coordinate:
Start Site(bp):49570984End Site(bp):49599164
External Links:ENSG00000213741



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AASDHPPT
chr11
106075501
106098699
+
ABCE1
chr4
145098288
145129524
+
ABCF2
chr7
151207837
151227166
-
AC006538.2
chr19
2717769
2740048
-
AC007192.1
chr19
18153158
18178117
+
AC011448.1
chr19
19516227
19536076
+
AC023055.1
chr12
55757275
55827546
-
AC098484.3
chr1
42767292
42794493
+
AC099811.2
chr17
42119674
42154916
-
AC124312.1
chr15
24955034
25000276
+
AC138811.2
chr16
18788063
18801519
-
AC245033.1
chr15
82536788
82573194
-
ACSS1
chr20
25006230
25058980
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR1A
chr10
102461881
102502712
-
ACTR3
chr2
113890063
113962596
+
AGO2
chr8
140520156
140635633
-
AHSA1
chr14
77457870
77469472
+
AK4
chr1
65147549
65232145
+
AL049844.3
chr6
143857318
143938471
+
AL132780.3
chr14
22946270
22982258
-
AL139353.1
chr14
31334312
31457441
-
ALAS1
chr3
52198086
52214327
+
ALDH18A1
chr10
95605941
95656711
-
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-182-5p
chr7
129770447
129770470
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007218.1
chr16
9666885
9676843
-
AC010618.3
chr19
17488990
17511889
-
AC016876.2
chr17
7581964
7584086
-
AC064802.1
chr8
114282067
114295839
+
AC087190.3
chr16
9104848
9113181
+
AC104793.1
chr4
161378953
161388417
+
AC245033.4
chr15
82533175
82540008
-
AL031595.3
chr22
44139365
44153626
+
AL117378.1
chr6
131901963
131920565
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.