Entry Detail


General Information

Database ID:exR0456438
RNA Name:RPS4X
RNA Type:mRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):72255679End Site(bp):72277248
External Links:ENSG00000198034



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGPAT3
chr21
43865223
43987592
+
ALDOA
chr16
30064164
30070457
+
ACSL3
chr2
222860942
222944639
+
ADAR
chr1
154582057
154628013
-
ACAA1
chr3
38103129
38137242
-
AL022238.4
chr22
40346529
40410054
+
AL136454.1
chr1
192716132
192716653
+
ADSL
chr22
40346500
40390463
+
AKAP13
chr15
85380571
85749358
+
ADTRP
chr6
11712054
11807046
-
ADA2
chr22
17178790
17258235
-
ABCF2
chr7
151207837
151227166
-
AC026464.4
chr16
69299682
69322700
+
AC011530.1
chr19
45779437
45785973
-
AL590764.2
chrX
71103987
71111575
-
AKR1A1
chr1
45550543
45570049
+
AASS
chr7
122073549
122144255
-
AC245033.1
chr15
82536788
82573194
-
ADRM1
chr20
62302093
62308862
+
AC010422.3
chr19
12643831
12648397
-
ACAD9
chr3
128879596
128916067
+
ACKR3
chr2
236567787
236582354
+
AC010132.3
chr7
42909273
42932174
-
AC139530.2
chr17
81703371
81720539
+
ACAT1
chr11
108116695
108147603
+
AC120057.2
chr17
7240427
7244635
-
ACTB
chr7
5527148
5563784
-
ACIN1
chr14
23058564
23095614
-
AC104452.1
chr3
49416777
49429314
-
ACTG1
chr17
81509971
81523847
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
hsa-miR-3651
chr9
92292461
92292484
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006511.5
chr12
8014093
8019007
-
AC016876.2
chr17
7581964
7584086
-
AC020663.1
chr16
4730115
4752565
-
AC023509.1
chr12
53441741
53467528
+
AC087190.3
chr16
9104848
9113181
+
AC091564.7
chr11
6610883
6616594
-
AC107959.2
chr8
23068229
23083619
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL118506.1
chr20
63861212
63864293
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.