Entry Detail


General Information

Database ID:exR0456861
RNA Name:SERF2
RNA Type:mRNA
Chromosome:chr15
Starnd:+
Coordinate:
Start Site(bp):43777087End Site(bp):43802589
External Links:ENSG00000140264



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AATF
chr17
36948954
37056871
+
ABCB4
chr7
87401697
87480435
-
AC005258.1
chr19
2269525
2341172
+
AC005943.1
chr19
1578339
1605445
-
AC023055.1
chr12
55757275
55827546
-
AC073896.1
chr12
56285916
56316059
-
AC099811.2
chr17
42119674
42154916
-
AC120057.2
chr17
7240427
7244635
-
ACLY
chr17
41866917
41930542
-
ACTB
chr7
5527148
5563784
-
ACTC1
chr15
34790230
34795549
-
ACTG1
chr17
81509971
81523847
-
ACTR8
chr3
53867066
53882152
-
ADA
chr20
44619522
44652233
-
ADD3
chr10
109996368
110135565
+
ADIPOR1
chr1
202940826
202958572
-
AGAP4
chr10
45825594
45853875
-
AHCY
chr20
34280268
34311802
-
AL049629.2
chr11
33698261
33722467
-
AL121753.1
chr20
35267885
35280043
-
AL136295.1
chr14
24189157
24213473
-
AL136295.4
chr14
24180395
24190416
-
AL139260.3
chr1
38864501
38881617
-
ALDH18A1
chr10
95605941
95656711
-
ALDH4A1
chr1
18871430
18902724
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-31-5p
chr9
21512158
21512178
-
hsa-miR-296-3p
chr20
58817626
58817647
-
hsa-miR-423-5p
chr17
30117095
30117117
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005618.1
chr5
141326210
141329357
+
AC016876.2
chr17
7581964
7584086
-
AC126365.1
chr17
20788071
20789584
+
AL121603.2
chr14
34874343
34876459
+
AL132780.1
chr14
22929607
22956374
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.