Entry Detail


General Information

Database ID:exR0456905
RNA Name:SET
RNA Type:mRNA
Chromosome:chr9
Starnd:+
Coordinate:
Start Site(bp):128683424End Site(bp):128696400
External Links:ENSG00000119335



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AATF
chr17
36948954
37056871
+
ABCB8
chr7
151028422
151047782
+
ABCC6
chr16
16148928
16223522
-
AC007846.2
chr17
5772926
6080792
+
AC010463.1
chr19
17267418
17282966
+
AC012254.2
chr18
47108188
47176345
-
AC138811.2
chr16
18788063
18801519
-
ACACA
chr17
37084992
37406836
-
ACBD3
chr1
226144679
226186741
-
ACTB
chr7
5527148
5563784
-
ACTN4
chr19
38647649
38731589
+
ADM
chr11
10305073
10307397
+
AGO3
chr1
35930718
36072500
+
AHCYL1
chr1
109984765
110023742
+
AKAP12
chr6
151239967
151358559
+
AL139011.2
chr1
160216800
160285130
-
AL590132.1
chr1
210858125
211134146
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-3648
chr21
8987026
8987046
+
hsa-miR-6728-3p
chr1
8866502
8866522
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AC124068.2
chr15
89335053
89336161
+
AL121985.1
chr1
160670778
160699761
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.