Entry Detail


General Information

Database ID:exR0456924
RNA Name:SF1
RNA Type:mRNA
Chromosome:chr11
Starnd:-
Coordinate:
Start Site(bp):64764606End Site(bp):64778786
External Links:ENSG00000168066



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AATF
chr17
36948954
37056871
+
AC005258.1
chr19
2269525
2341172
+
AC008750.8
chr19
51350373
51368099
-
AC008878.3
chr19
7382834
7470241
+
AC011005.1
chr7
129126518
129130793
+
AC015813.2
chr17
57989038
58007246
-
AC245033.1
chr15
82536788
82573194
-
ACAD9
chr3
128879596
128916067
+
ACTB
chr7
5527148
5563784
-
ACTR2
chr2
65227753
65271253
+
AKR1B1
chr7
134442356
134459284
-
AL031708.1
chr16
1632259
1686715
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC012321.1
chr16
69703065
69704652
+
AC022336.2
chr3
124723788
124726325
+
AD000090.1
chr19
35557956
35581954
+
AL121992.1
chr1
15586136
15603626
-
AL137127.1
chr1
19072110
19075511
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.