Entry Detail


General Information

Database ID:exR0457030
RNA Name:SHISA5
RNA Type:mRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):48467798End Site(bp):48504826
External Links:ENSG00000164054



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABTB2
chr11
34150987
34358010
-
AC004832.3
chr22
30409255
30428990
+
AC012254.2
chr18
47108188
47176345
-
AC015813.2
chr17
57989038
58007246
-
AC068580.4
chr11
1734821
1763954
-
AC073896.1
chr12
56285916
56316059
-
AC138811.2
chr16
18788063
18801519
-
ACTG1
chr17
81509971
81523847
-
ADD2
chr2
70607618
70768225
-
AGAP3
chr7
151085831
151144436
+
AL035078.4
chr11
31812391
32104665
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-147a
chr9
120244985
120245004
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC027307.3
chr19
1440839
1441938
+
AC118758.3
chr7
56809214
56848800
-
AC132217.1
chr11
2129121
2129964
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.