Entry Detail


General Information

Database ID:exR0457628
RNA Name:SNRPB
RNA Type:mRNA
Chromosome:chr20
Starnd:-
Coordinate:
Start Site(bp):2461634End Site(bp):2470853
External Links:ENSG00000125835



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005258.1
chr19
2269525
2341172
+
AC007192.1
chr19
18153158
18178117
+
AC010422.3
chr19
12643831
12648397
-
AC091551.1
chr18
50968019
51058144
+
AC093525.2
chr16
2496032
2520218
+
AC097637.1
chr3
52221081
52231190
-
AC124312.1
chr15
24955034
25000276
+
ACACA
chr17
37084992
37406836
-
ACIN1
chr14
23058564
23095614
-
ACSF3
chr16
89088375
89164121
+
ACTB
chr7
5527148
5563784
-
ACTC1
chr15
34790230
34795549
-
ADAM10
chr15
58588809
58749791
-
ADRA2C
chr4
3766348
3768526
+
AGRN
chr1
1020120
1056118
+
AKR1A1
chr1
45550543
45570049
+
AL121845.3
chr20
63708864
63739103
+
AL365205.1
chr6
41780349
41790141
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005618.1
chr5
141326210
141329357
+
AC016876.2
chr17
7581964
7584086
-
AC026362.1
chr12
122975320
122982907
+
AC079781.5
chr7
97851688
97972985
-
AC091564.7
chr11
6610883
6616594
-
AC109460.3
chr16
28974804
28990775
+
AL021707.1
chr22
38739003
38749041
+
AL023803.2
chr20
38955910
38956547
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.