Entry Detail


General Information

Database ID:exR0457807
RNA Name:SPG7
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):89490719End Site(bp):89557768
External Links:ENSG00000197912



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006486.1
chr19
42234583
42255132
-
ADAM15
chr1
155050566
155062775
+
ADAMTS13
chr9
133414358
133459402
+
ADGRL1
chr19
14147743
14206187
-
ADGRV1
chr5
90529344
91164437
+
AFAP1
chr4
7758714
7939926
-
AGRN
chr1
1020120
1056118
+
AKT1S1
chr19
49869033
49878459
-
AL121594.1
chr14
35122549
35317474
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005332.6
chr17
68126666
68129586
+
AC007952.4
chr17
19112000
19112636
-
AC016876.2
chr17
7581964
7584086
-
AC067930.1
chr8
143579636
143580670
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.