Entry Detail


General Information

Database ID:exR0457951
RNA Name:SSR4
RNA Type:mRNA
Chromosome:chrX
Starnd:+
Coordinate:
Start Site(bp):153793516End Site(bp):153798499
External Links:ENSG00000180879



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF3
chr3
184186023
184194012
+
AC010132.3
chr7
42909273
42932174
-
AC027796.3
chr17
3585149
3636249
-
ACTB
chr7
5527148
5563784
-
ADA
chr20
44619522
44652233
-
ADCY9
chr16
3953387
4116442
-
ADK
chr10
74151202
74709963
+
AFG3L2
chr18
12328944
12377227
-
AHCY
chr20
34280268
34311802
-
AKNA
chr9
114334156
114394405
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008753.2
chr19
53788782
53789168
+
AC010615.2
chr19
21444241
21463908
-
AL121832.3
chr20
62402236
62405935
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.