Entry Detail


General Information

Database ID:exR0458054
RNA Name:STK4
RNA Type:mRNA
Chromosome:chr20
Starnd:+
Coordinate:
Start Site(bp):44966479End Site(bp):45080021
External Links:ENSG00000101109



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF2
chr7
151207837
151227166
-
AC245033.1
chr15
82536788
82573194
-
AGPAT1
chr6
32168212
32178096
-
AGTRAP
chr1
11736084
11754802
+
AKR1B1
chr7
134442356
134459284
-
AKT3
chr1
243488233
243851079
-
ALDH9A1
chr1
165662216
165698863
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-let-7a-5p
chr9
94175962
94175983
+
hsa-miR-24-3p
chr9
95086064
95086085
+
hsa-miR-122-5p
chr18
58451088
58451109
+
hsa-miR-130a-3p
chr11
57641252
57641273
+
hsa-miR-135a-5p
chr12
97563834
97563856
+
hsa-miR-138-5p
chr16
56858527
56858549
+
hsa-miR-130b-3p
chr22
21653354
21653375
+
hsa-miR-362-5p
chrX
50008968
50008991
+
hsa-miR-135b-5p
chr1
205448361
205448383
-
hsa-miR-1224-5p
chr3
184241405
184241423
+
hsa-miR-1276
chr15
85770548
85770567
-
hsa-let-7c-5p
chr21
16539838
16539859
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC087190.3
chr16
9104848
9113181
+
AC245033.4
chr15
82533175
82540008
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.