Entry Detail


General Information

Database ID:exR0458204
RNA Name:SYNGR2
RNA Type:mRNA
Chromosome:chr17
Starnd:+
Coordinate:
Start Site(bp):78168558End Site(bp):78173527
External Links:ENSG00000108639



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006538.2
chr19
2717769
2740048
-
AC010422.3
chr19
12643831
12648397
-
AC046185.1
chr17
63702845
63752097
-
AC120057.2
chr17
7240427
7244635
-
ACAA1
chr3
38103129
38137242
-
ACAT1
chr11
108116695
108147603
+
ACAT2
chr6
159762045
159779112
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTN4
chr19
38647649
38731589
+
ACVR1B
chr12
51951699
51997078
+
ADCY7
chr16
50246137
50318135
+
AGK
chr7
141551278
141655244
+
AGPAT3
chr21
43865223
43987592
+
AKT2
chr19
40230317
40285536
-
AL121758.1
chr20
646626
675800
-
AL132780.3
chr14
22946270
22982258
-
AL928654.3
chr14
105487199
105492267
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC026471.1
chr16
31456711
31459736
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.