exRNAdisease

Entry Detail

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General Information

Database ID: exR0458987 RNA Name: TMSB4X RNA Type: mRNA Chromosome: chrX Starnd: + Coordinate: Start Site(bp): 12975110 End Site(bp): 12977227 External Links: ENSG00000205542

Disease Information

Disease Name: Disease Category: MeSH ID: Type: Alias:

Expression Detail

GEO ID: GSE122377 Description: Tuberculous Meningitis in Pediatric Patients [CSF] Experimental Design: Disease Sample Source Case Disease Type: Pediatric TB meningitis Case Disease SubType: NA Case Sample: Ventricular Cerebrospinal Fluid Control Sample: Lumbar Puncture Cerebrospinal Fluid Number of Case: 12 Number of Control: 12 Number of Samples: 24

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTB chr7 5527148 5563784 - ACTR2 chr2 65227753 65271253 + AC006064.6 chr12 6556886 6607367 - ADH5 chr4 99070978 99088801 - ADPRH chr3 119579268 119589945 + ADGRL1 chr19 14147743 14206187 - AGO2 chr8 140520156 140635633 - AKT1 chr14 104769349 104795751 - AC012184.2 chr16 70299194 70372582 + AC093525.1 chr16 2513965 2527955 + ADRM1 chr20 62302093 62308862 + ALDOA chr16 30064164 30070457 + AC023055.1 chr12 55757275 55827546 - AC139530.2 chr17 81703371 81720539 + AL162417.1 chr9 133098121 133163914 - AC048338.1 chr12 122207779 122266423 - AL021546.1 chr12 120438198 120460006 + AC073508.2 chr17 40627356 40665141 - ABT1 chr6 26596953 26600739 + AC073896.1 chr12 56285916 56316059 - ABHD5 chr3 43690108 43734371 + AGPAT5 chr8 6708642 6761503 + ADSL chr22 40346500 40390463 + ADORA2A chr22 24417879 24442357 + ACAP1 chr17 7336529 7351477 + AKAP13 chr15 85380571 85749358 + ACTR1A chr10 102461881 102502712 - AFTPH chr2 64524305 64593005 + ADD2 chr2 70607618 70768225 - ACOT7 chr1 6264269 6394391 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-142-3p chr17 58331245 58331267 - hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-4442 chr3 25664875 25664891 - hsa-miR-7847-3p chr11 1880105 1880125 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004554.2 chrX 11668401 11757718 - AC004687.1 chr17 58330884 58332508 - AC005618.1 chr5 141326210 141329357 + AC005899.4 chr17 32328441 32329395 + AC007744.1 chr2 56147630 56386171 + AC007780.1 chr17 68413623 68524949 + AC007952.4 chr17 19112000 19112636 - AC010247.1 chr19 42132555 42137099 + AC017104.1 chr2 231388976 231394991 + AC022167.2 chr16 8848105 8860456 + AC024940.6 chr12 31280422 31280895 - AC026362.1 chr12 122975320 122982907 + AC026461.1 chr16 56682470 56687807 + AC026471.1 chr16 31456711 31459736 - AC055854.1 chr8 22690150 22798616 + AC063949.2 chr12 92421531 92483680 + AC073896.4 chr12 56162359 56190284 - AC114271.1 chr19 10333436 10336248 + AC139149.1 chr17 81514047 81527776 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AJ271736.1 chrX 156004218 156022236 + AL022311.1 chr22 37876148 37895563 + AL035458.2 chr20 34234840 34281173 - AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 31434901 Title: Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity Author: Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ Journal: Nat Commun. 2019 Aug 21;10(1):3767. Description: Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.