Entry Detail


General Information

Database ID:exR0459468
RNA Name:TUBA1C
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):49188736End Site(bp):49274603
External Links:ENSG00000167553



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADCK2
chr7
140672945
140696261
+
AHCYL1
chr1
109984765
110023742
+
ALDH7A1
chr5
126531200
126595362
-
AC010323.1
chr19
8308283
8321379
-
AL139011.2
chr1
160216800
160285130
-
ADNP2
chr18
80109262
80147523
+
ABR
chr17
1003518
1229738
-
ABCA2
chr9
137007234
137028922
-
ACBD5
chr10
27195214
27242130
-
AC027644.4
chr7
66628958
66811189
+
AC093525.2
chr16
2496032
2520218
+
ACAT2
chr6
159762045
159779112
+
AK9
chr6
109492856
109691217
-
ADORA1
chr1
203090654
203167405
+
AHCY
chr20
34280268
34311802
-
ACTB
chr7
5527148
5563784
-
AGTRAP
chr1
11736084
11754802
+
ACIN1
chr14
23058564
23095614
-
ACTR3
chr2
113890063
113962596
+
AGBL3
chr7
134986508
135147963
+
ACTG1
chr17
81509971
81523847
-
AGK
chr7
141551278
141655244
+
ACTL6A
chr3
179562886
179588407
+
AC008982.1
chr19
38817471
38840178
-
AL162231.3
chr9
34646645
34657113
+
ALDOA
chr16
30064164
30070457
+
AL136454.1
chr1
192716132
192716653
+
AC004922.1
chr7
99325879
99394653
+
AC092143.1
chr16
89919165
89936092
+
ACTR1B
chr2
97655939
97664044
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-367-3p
chr4
112647877
112647898
-
hsa-miR-3610
chr8
116874740
116874759
-
hsa-miR-3654
chr7
133034860
133034878
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004687.1
chr17
58330884
58332508
-
AC011298.1
chr2
240686334
240690414
+
AC026362.1
chr12
122975320
122982907
+
AC233266.2
chr2
91580336
91580863
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.