Entry Detail


General Information

Database ID:exR0461057
RNA Name:hsa-miR-28-5p
RNA Type:miRNA
Chromosome:chr3
Starnd:+
Coordinate:
Start Site(bp):188688794End Site(bp):188688815
External Links:hsa-miR-28-5p



Disease Information

Disease Name:Clear Cell Renal Cell Carcinoma
Disease Category:Cancers
MeSH ID:D002292
Type:Neoplasms/Urogenital Neoplasms
Alias:Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas



Expression Detail

GEO ID:GSE129255
Description:Urinary exosome miR-30c-5p as a biomarker of clear cell renal cell carcinoma that inhibits progression by targeting HSPA5
Experimental Design:Cancer vs Control
Case Disease Type:Clear Cell Renal Cell Carcinoma
Case Disease SubType:NA
Case Sample:Clear Cell Renal Cell Carcinoma
Control Sample:Healthy
Number of Case:3
Number of Control:1
Number of Samples:4





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RTL8A
chrX
135050932
135052196
-
LYPD3
chr19
43460787
43465608
-
RGMA
chr15
93035273
93089204
-
GLYR1
chr16
4803203
4847288
-
E2F6
chr2
11444375
11466177
-
PTPN23
chr3
47381011
47413435
+
KCTD5
chr16
2682523
2709030
+
GPCPD1
chr20
5544439
5611006
-
ENSA
chr1
150600851
150629612
-
AMOTL2
chr3
134355874
134375479
-
SSR2
chr1
156009048
156020951
-
FAM102A
chr9
127940582
127980989
-
N4BP1
chr16
48538726
48620148
-
CPSF2
chr14
92121969
92172145
+
EZH1
chr17
42700275
42745049
-
KIAA1522
chr1
32741830
32774970
+
LONRF2
chr2
100271875
100322501
-
MAPK1
chr22
21754500
21867680
-
LASP1
chr17
38869859
38921770
+
SMYD1
chr2
88067825
88113384
+
NAPA
chr19
47487637
47515091
-
URGCP
chr7
43875894
43926411
-
SMG5
chr1
156249224
156282825
-
DYRK1A
chr21
37365573
37526358
+
RTL8B
chrX
135020513
135022542
-
SLC31A1
chr9
113221544
113264492
+
SEH1L
chr18
12947133
12987536
+
ZBTB7B
chr1
155002630
155018522
+
TUB
chr11
8019244
8106112
+
TEX261
chr2
70985942
70994873
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000417
chr12
69644908
69656342
+
hsa_circ_0001146
chr20
34241449
34246936
-
hsa_circ_0001164
chr20
45891031
45923523
-
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009065.4
chr16
2119207
2120248
+
AC016876.2
chr17
7581964
7584086
-
AC026362.1
chr12
122975320
122982907
+
AC118758.3
chr7
56809214
56848800
-
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
OIP5-AS1
chr15
41283990
41309737
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA