Entry Detail


General Information

Database ID:exR0500443
RNA Name:HCFC1
RNA Type:mRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):153947557End Site(bp):153971818
External Links:ENSG00000172534



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE32175
Description:Development of Transcriptomic Biomarker Signature in Human Saliva to Detect Lung Cancer
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:NA
Case Sample:Lung Cancer
Control Sample:Healthy
Number of Case:10
Number of Control:10
Number of Samples:20





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AATF
chr17
36948954
37056871
+
ABCC1
chr16
15949577
16143074
+
AC005258.1
chr19
2269525
2341172
+
AC008763.2
chr19
7629796
7643048
+
AC099811.2
chr17
42119674
42154916
-
ACO2
chr22
41469117
41528989
+
ACTN1
chr14
68874143
68979440
-
ACVR1B
chr12
51951699
51997078
+
ADAM11
chr17
44758988
44781846
+
ADAMTS1
chr21
26835755
26845409
-
ADCY3
chr2
24819169
24919839
-
AL136295.1
chr14
24189157
24213473
-
ALDH18A1
chr10
95605941
95656711
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-515-5p
chr19
53685022
53685045
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC002116.1
chr19
36008638
36014235
-
AC002470.2
chr22
20979462
20998121
+
AC007952.4
chr17
19112000
19112636
-
AC060780.1
chr17
43148368
43171037
-
AC068205.2
chr11
43578889
43840030
+
AC093525.7
chr16
2561471
2565096
-
AC109460.3
chr16
28974804
28990775
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:22689099
Title:Development of transcriptomic biomarker signature in human saliva to detect lung cancer.
Author:Zhang L(#), Xiao H(#), Zhou H, Santiago S, Lee JM, Garon EB,Yang J, Brinkmann O, Yan X, Akin D, Chia D, Elashoff D, ParkNH, Wong DTW.
Journal:Cell Mol Life Sci. 2012 Oct;69(19):3341-3350.
Description:This report provides theproof of concept of salivary biomarkers for the non-invasive detection of thesystematic disease.