Entry Detail


General Information

Database ID:exR0503537
RNA Name:NIPSNAP1
RNA Type:mRNA
Chromosome:chr22
Starnd:-
Coordinate:
Start Site(bp):29554808End Site(bp):29581327
External Links:ENSG00000184117



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE32175
Description:Development of Transcriptomic Biomarker Signature in Human Saliva to Detect Lung Cancer
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:NA
Case Sample:Lung Cancer
Control Sample:Healthy
Number of Case:10
Number of Control:10
Number of Samples:20





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AKIP1
chr11
8911139
8920084
+
ACTB
chr7
5527148
5563784
-
AL358113.1
chr9
69035747
69255187
+
ACVR1B
chr12
51951699
51997078
+
ACTN4
chr19
38647649
38731589
+
AC006486.1
chr19
42234583
42255132
-
AC092143.1
chr16
89919165
89936092
+
AC009133.6
chr16
29812261
29820092
+
ADH5
chr4
99070978
99088801
-
AC010422.3
chr19
12643831
12648397
-
AL136454.1
chr1
192716132
192716653
+
AC091959.3
chr5
146203550
146339251
+
AC046185.1
chr17
63702845
63752097
-
AHCY
chr20
34280268
34311802
-
ALDH9A1
chr1
165662216
165698863
-
AC048338.1
chr12
122207779
122266423
-
ABT1
chr6
26596953
26600739
+
ACTG1
chr17
81509971
81523847
-
AC245033.1
chr15
82536788
82573194
-
AC131160.1
chr3
183815568
183884889
-
AFG3L2
chr18
12328944
12377227
-
AL121758.1
chr20
646626
675800
-
AC004922.1
chr7
99325879
99394653
+
ABHD5
chr3
43690108
43734371
+
AL022238.4
chr22
40346529
40410054
+
AC010463.1
chr19
17267418
17282966
+
AIP
chr11
67483026
67491103
+
AFDN
chr6
167826922
167972023
+
AC006064.6
chr12
6556886
6607367
-
AL121594.1
chr14
35122549
35317474
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1286
chr22
20249145
20249165
-
hsa-miR-1321
chrX
85835832
85835849
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005899.4
chr17
32328441
32329395
+
AC006160.1
chr4
17586267
17614585
-
AC007952.4
chr17
19112000
19112636
-
AC016026.1
chr22
17787652
17811497
-
AC016876.2
chr17
7581964
7584086
-
AC026362.1
chr12
122975320
122982907
+
AC027031.2
chr8
106270144
106272902
+
AC091820.2
chr5
167287320
167294273
-
AC132217.1
chr11
2129121
2129964
-
AC245033.4
chr15
82533175
82540008
-
AD000090.1
chr19
35557956
35581954
+
AL021707.1
chr22
38739003
38749041
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:22689099
Title:Development of transcriptomic biomarker signature in human saliva to detect lung cancer.
Author:Zhang L(#), Xiao H(#), Zhou H, Santiago S, Lee JM, Garon EB,Yang J, Brinkmann O, Yan X, Akin D, Chia D, Elashoff D, ParkNH, Wong DTW.
Journal:Cell Mol Life Sci. 2012 Oct;69(19):3341-3350.
Description:This report provides theproof of concept of salivary biomarkers for the non-invasive detection of thesystematic disease.