Entry Detail


General Information

Database ID:exR0511067
RNA Name:AGTPBP1
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):85546539End Site(bp):85742029
External Links:ENSG00000135049



Disease Information

Disease Name:Lactation
Disease Category:Other Diseases
MeSH ID:D007774
Type:Phenomena and Processes Category/Reproductive and Urinary Physiological Phenomena
Alias:Milk Secretion//Milk Secretions//Lactation, Prolonged//Lactations, Prolonged//Prolonged Lactation//Prolonged Lactations



Expression Detail

GEO ID:GSE36936
Description:Gene Expression in the Human Mammary Epithelium during Initiation of Lactation.
Experimental Design:Time Series
Case Disease Type:Lactation
Case Disease SubType:NA
Case Sample:12h post delivery
Control Sample:6h post delivery
Number of Case:7
Number of Control:7
Number of Samples:14





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
COL5A1
chr9
134641803
134844843
+
EEF2
chr19
3976056
3985463
-
EPOP
chr17
38671703
38674957
-
CCDC88C
chr14
91271323
91417844
-
TADA2B
chr4
7041899
7057952
+
HNRNPK
chr9
83968083
83980616
-
RPS27A
chr2
55231903
55235853
+
PSMD3
chr17
39980807
39997959
+
VAMP3
chr1
7771296
7781432
+
GPRC5B
chr16
19856691
19886167
-
CCDC189
chr16
30757423
30762221
-
CCAR2
chr8
22604632
22621514
+
CAND2
chr3
12796472
12871916
+
DNAJB6
chr7
157335381
157417439
+
TPT1
chr13
45333471
45341370
-
METTL7A
chr12
50923472
50932510
+
PLXNA3
chrX
154458281
154477779
+
SMARCD1
chr12
50085200
50100707
+
ST13
chr22
40824535
40856639
-
U2SURP
chr3
142964497
143060725
+
ZNF234
chr19
44141554
44160313
+
ABHD14B
chr3
51968510
51983409
-
TYMS
chr18
657653
673578
+
GATAD2B
chr1
153789030
153923360
-
STAT1
chr2
190908460
191020960
-
RANBP1
chr22
20115938
20127355
+
VTI1B
chr14
67647085
67674820
-
IRF4
chr6
391752
411443
+
C1orf210
chr1
43281877
43285617
-
CALM3
chr19
46601074
46610782
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
PDCD4-AS1
chr10
110869868
110872233
-
ZFAS1
chr20
49278178
49299600
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:22649065
Title:Gene regulation of UDP-galactose synthesis and transport: potential rate-limiting processes in initiation of milk production in humans
Author:Mohammad MA, Hadsell DL, Haymond MW.
Journal:Am J Physiol Endocrinol Metab. 2012 Aug 1;303(3):E365-76.
Description:We have utilized our established model of the RNA isolated from breast milk fat globule from seven healthy, exclusively breastfeeding women from 6 h to 42 days following delivery to determine the temporal coordination of changes in gene expression in the carbohydrate metabolic processes emphasizing the lactose synthesis pathway in human mammary epithelial cell.