Entry Detail


General Information

Database ID:exR0726318
RNA Name:ACSF3
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):89088375End Site(bp):89164121
External Links:ENSG00000176715



Disease Information

Disease Name:Bladder Cancer
Disease Category:Cancers
MeSH ID:D001749
Type:Neoplasms/Urogenital Neoplasms
Alias:Urinary Bladder Neoplasms//Neoplasm, Urinary Bladder//Urinary Bladder Neoplasm//Neoplasms, Bladder//Bladder Neoplasms//Bladder Neoplasm//Neoplasm, Bladder//Bladder Tumors//Bladder Tumor//Tumor, Bladder//Tumors, Bladder//Urinary Bladder Cancer//Cancer, Urinary Bladder//Malignant Tumor of Urinary Bladder//Cancer of the Bladder//Bladder Cancer//Bladder Cancers//Cancer, Bladder//Cancer of Bladder



Expression Detail

GEO ID:GSE51843
Description:A Pilot Study on the Potential of RNA-Associated to Urinary Vesicles as a Suitable Non-Invasive Source for Diagnostic Purposes in Bladder Cancer
Experimental Design:Cancer vs Control
Case Disease Type:Bladder Cancer
Case Disease SubType:NA
Case Sample:Bladder Cancer
Control Sample:Control
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
REXO1
chr19
1815248
1848483
-
PBX1
chr1
164555584
164899296
+
RBFOX2
chr22
35738736
36028824
-
FAM193B
chr5
177519789
177554563
-
SLC47A1
chr17
19495385
19579034
+
ATG2A
chr11
64894546
64917211
-
TP63
chr3
189631389
189897276
+
ARID1A
chr1
26693236
26782104
+
SBNO2
chr19
1107637
1174268
-
AKT2
chr19
40230317
40285536
-
LRRC14
chr8
144517992
144525172
+
DGKD
chr2
233354507
233472104
+
SATB1
chr3
18345377
18445588
-
DCTD
chr4
182890060
182917936
-
NHSL1
chr6
138422043
138692571
-
SOX4
chr6
21593751
21598619
+
ZNF227
chr19
44207547
44237268
+
FAM189B
chr1
155247205
155255483
-
PAK4
chr19
39125770
39182816
+
SNRPB
chr20
2461634
2470853
-
RPL18A
chr19
17859910
17864153
+
NDUFV2
chr18
9102630
9134345
+
ABR
chr17
1003518
1229738
-
TANGO2
chr22
20017014
20067164
+
BPTF
chr17
67825503
67984378
+
UBA52
chr19
18571730
18577550
+
SYAP1
chrX
16719612
16765340
+
ADAR
chr1
154582057
154628013
-
TXNL1
chr18
56597209
56651600
-
NUP153
chr6
17615035
17706834
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AP005263.1
chr18
9102736
9254346
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:24458310
Title:A Pilot Study on the Potential of RNA-Associated to Urinary Vesicles as a Suitable Non-Invasive Source for Diagnostic Purposes in Bladder Cancer.
Author:Perez A, Loizaga A, Arceo R, Lacasa I, Rabade A, Zorroza K,Mosen-Ansorena D, Gonzalez E, Aransay AM, Falcon-Perez JM, Unda-Urzaiz M, Royo F.
Journal:Cancers (Basel). 2014 Jan 22;6(1):179-92.
Description:LASS2 and GALNT1 were present in cancer patients, while ARHGEF39 and FOXO3 were found only in non-cancer urinary vesicles, which could be diagnostic markers for bladder cancer.