exRNAdisease

General Information

Database ID:

exR0728421

RNA Name:

hsa-let-7a-5p

RNA Type:

miRNA

Chromosome:

chr9

Starnd:

Coordinate:

Start Site(bp):

94175962

End Site(bp):

94175983

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
HMGA1	chr6	34236873	34246231	+
PDPR	chr16	70113626	70162537	+
ERO1A	chr14	52639915	52695900	-
UBE2G2	chr21	44768580	44801826	-
CD82	chr11	44564427	44620358	+
YOD1	chr1	207043849	207052980	-
HMGA2	chr12	65824131	65966295	+
MYL12A	chr18	3247481	3256236	+
CTPS2	chrX	16587999	16712936	-
MARCKSL1	chr1	32333839	32336233	-
AGRN	chr1	1020120	1056118	+
STK4	chr20	44966479	45080021	+
BRD4	chr19	15235519	15332545	-
C1orf43	chr1	154206696	154220637	-
PLD3	chr19	40348456	40380439	+
BACH1	chr21	29194071	29630751	+
PPARA	chr22	46150521	46243756	+
WDR83OS	chr19	12668073	12669415	-
BCAM	chr19	44809071	44821421	+
IGF2BP1	chr17	48997385	49056145	+
SNRPC	chr6	34757505	34773857	+
COIL	chr17	56938199	56961050	-
RANBP2	chr2	108719482	108785809	+
ZNF576	chr19	43596392	43601157	+
BLOC1S6	chr15	45587214	45615945	+
ARHGAP28	chr18	6729718	6915716	+
TRIM65	chr17	75880335	75896951	-
NHLRC3	chr13	39038306	39050109	+
TAF4	chr20	61953469	62065810	-
IGDCC3	chr15	65327127	65378002	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000247	chr10	74474868	74475660	+
hsa_circ_0000987	chr2	30748452	30756180	+
hsa_circ_0000246	chr10	74468040	74475660	+
hsa_circ_0000018	chr1	15860731	15863309	+
hsa_circ_0000038	chr1	28800065	28802803	+
hsa_circ_0000799	chr17	65941524	65972074	+
hsa_circ_0001164	chr20	45891031	45923523	-

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC006064.5	chr12	6510275	6510522	+
AC074117.1	chr2	27356246	27367622	+
AC109460.3	chr16	28974804	28990775	+
AC124045.1	chr3	44667412	44669364	+
AL359924.1	chr1	237862175	237928321	+
AP000766.1	chr11	107312132	107316271	-
ARHGAP27P1-BPTFP1-KPNA2P3	chr17	64749663	64781707	-
KCNQ1OT1	chr11	2608328	2699994	-
LINC00265	chr7	39733430	39793092	+
LINC02381	chr12	54126082	54147485	+
MIRLET7BHG	chr22	46053869	46113928	+
NEAT1	chr11	65422774	65445540	+
NUTM2A-AS1	chr10	87201647	87342612	-
SNHG16	chr17	76557764	76565348	+
SNHG4	chr5	139274102	139284899	+
TMPO-AS1	chr12	98512973	98516422	-
XIST	chrX	73820649	73852723	-
ZNF436-AS1	chr1	23368997	23371839	+
AD000090.1	chr19	35557956	35581954	+
LINC01744	chr1	232727251	232751299	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference