exRNAdisease

Entry Detail

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General Information

Database ID: exR0728613 RNA Name: hsa-miR-147a RNA Type: miRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 120244985 End Site(bp): 120245004 External Links: hsa-miR-147a

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Advanced Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TWF1 chr12 43793723 43806375 - GLYR1 chr16 4803203 4847288 - PLPP6 chr9 4662294 4665258 + USP37 chr2 218450251 218568351 - CTSD chr11 1752755 1764573 - NUP58 chr13 25301556 25349800 + JARID2 chr6 15246069 15522042 + SCARB1 chr12 124776856 124882668 - MGRN1 chr16 4616493 4690974 + CRKL chr22 20917407 20953747 + SIPA1L3 chr19 37907208 38208369 + TIMP3 chr22 32801701 32863043 + SNAI2 chr8 48917598 48921740 - FAM13A chr4 88725955 89111398 - ZNF618 chr9 113876282 114056591 + SMIM12 chr1 34712737 34859755 - CCND1 chr11 69641156 69654474 + FOXK2 chr17 82519713 82644662 + SLC7A1 chr13 29509414 29595688 - ATP11A chr13 112690329 112887168 + PSME3 chr17 42824385 42843760 + WIZ chr19 15419978 15449956 - PURA chr5 140107777 140125619 + STARD7 chr2 96184859 96208825 - OSBPL9 chr1 51577179 51798427 + PIK3C2A chr11 17077730 17207983 - NKIRAS2 chr17 42011382 42025644 + LIMD1 chr3 45555394 45686341 + TNFRSF10B chr8 23020133 23069031 - ARHGAP35 chr19 46860997 47005077 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000816 chr17 80521229 80526077 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004951.4 chr7 43951910 44019151 - AC010442.1 chr5 466124 473098 - AL355987.2 chr9 136800366 136829466 + DSCAM-AS1 chr21 40383083 40385358 + KCNQ1OT1 chr11 2608328 2699994 - MIR503HG chrX 134543119 134546642 - NEAT1 chr11 65422774 65445540 + POLR2J4 chr7 43940895 44019175 - Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA